miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|270440027|gb|GT822469.1|GT822469 CTGAGGGGAGGTCCTATGTGTTCACGGTATATGGGTACAAATGGACCACCAAGTACGTACCGGCGCCCTTGGTCTGTAAA
GTCTTCTGTGTTGGTGGCCACGATTGGGTTGTGAAGTATTACCCAAACGGTGCCCGCAAAGATTATGCTGACTTCATATC
TGTTTATCTTGTTCTTCATTCTGCCAATGCCAAGGATGTGGAGGTGGTTTTCACGTTTACTTTACTTGACAAGGCTGGAG
AACTAGTCCCTTCTTACAGCCGAACCATGGCCGGGCATACCTTCGCAAAGAAAGGTTCATCTGGGGGATACCATGATTTT
ATCAAGAAGGTGGATTTAGAGGGATCACTTTATTTAAGGGATGATGATAGTTTCAGCTTCAGATGCGATGTCAACGTACT
GAAGCATAATCAGCAGAAATGCGACCAGCCTGTTGTAATACCCCCAAGCAACTTGTGTCGGCATCTCAAAGACCTCCTGG
AGAGCATGGATGGAGCGGATGTGATCTTTCATGTAGGTGGGGAGAAATTCTCAGCTCATAGAGTCATGCTTGCTGCTTGT
TCATCAGTATTCAAAGCAGAGTTCTTTGGTGCCATGAAGGAGAAAGCGAGCAGTCTGATTGAAGTTTGTGATTTGGAAGC
TGATGTTTTTAAGTCCTTGCTCCATTTCATATACACGGGTTCACTGCCTGAGGCAAATAATGGAGATGCACTCGGGGATG
TGGGTGATGGCTTGCATCTACTTGTGCAGCTGACAGTACAATATAGAAG




Most similar to sp|O22286|BPM3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3
           OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1
          Length = 408

 Score =  147 bits (371), Expect = 8e-35
 Identities = 87/235 (37%), Positives = 136/235 (57%), Gaps = 9/235 (3%)
 Frame = +3

Query: 12  SYVFTVYGYKWTTKYVPAPLV-CKVFCVGGHDWVVKYYPNGAR-KDYADFISVYLVLHSA 185
           S+ FT+ GY       P   +   +F VGG+DW + +YP+G   +D + +IS+++ L S 
Sbjct: 26  SHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIALAS- 84

Query: 186 NAKDVEVVFTFTLLDKAGE----LVPSYSRTMAG--HTFAKKGSSGGYHDFIKKVDLEGS 347
           ++ D+  +F  TL+D++G+    +   + R + G  +T   KGS  GY  F K+  LE S
Sbjct: 85  DSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGYKRFFKRSALETS 144

Query: 348 LYLRDDDSFSFRCDVNVLKHNQQKCDQ-PVVIPPSNLCRHLKDLLESMDGADVIFHVGGE 524
            YL+DD      C V V++   +   Q  +V+P SN+ + LKDLL+S  G D+ F VG E
Sbjct: 145 DYLKDD-CLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEVGCDIAFQVGDE 203

Query: 525 KFSAHRVMLAACSSVFKAEFFGAMKEKASSLIEVCDLEADVFKSLLHFIYTGSLP 689
            + AH+++LAA S VF+A+FFG +       I + D+E  +FK++L FIYT  LP
Sbjct: 204 TYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFIYTDVLP 258